• Version 5

  Genome v0.5 Transcriptome v5.1

• Version 6

  Genome v0.5 Transcriptome v6.1

• GBrowse

  Gbrowse the Genome

• JBrowse

  JBrowse the Genome

• Gene ATLAS

  Patterns of Gene Expression and links to Gene map and Transcript information
  Version 5     Version 6

• microRNA ATLAS

  Chromosome location of miR genes, hairpin structures of pre-miRNAs and links to target genes

• SEARCH Annotation by Keywords
  Version 5     Version 6

• SEARCH Sequence by ID
  Version 5     Version 6

• Benth Babelfish

  Relates genes, transcripts and scaffold locations between Solgenomic's and our assembies.

• amiR

  Vectors and Designer for artificial miRNAs

• RNAi

  Vectors and Designer for hpRNA silencing

• CRISPR Nickase

  Find sites (reduced off-target) and design constructs

• CRISPR U6-Cas9

  Find sites (fewer) and design constructs

• CRISPR tRNA-Cas9

  Find sites (more) and design constructs

Vectors

• RNAi Vectors

  pHannibal, pKannibal and pHellsgate Vectors

• amiR Vectors

  pBlueGreen Vector for primer designer system

• VIGS Vectors

  p35S:PVX and pCMV Vectors

• Expression Vectors

  pART7 and pART27 Vectors

Plasmid Bank

In-house plasmids

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RNAi Target Tester

Quickstart H.armigera Acetylcholinesterase vs the animal spectrum

For predicting cross-silencing in Trans-Kingdom RNAi

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Simple Sequence Manipulations

Reverse Complement

Protein Cleanup

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• Wild and Lab Isolate Descriptions

  Descriptions of wild and lab isolate collection sites and phenotypes.

• Details of 16c

  Description of the site and inserted sequence of 16c isolate.

• Evolution

  Evolution of N.benthamiana and the Suaveolentes

• Relatives

  Meet the Relatives

• Provenance

  Provenance of Lab Isolate

• Available Seed

  Seed of LAB and wild N.benthamiana

• Movies

  Time lapse movies of:
  GFP-labelled virus spread
  mobile silencing signal

• Sequencing

  Genome and Transcriptome Assemblies and Metrics

• Dataset Downloads

  Genome and Transcriptome Assemblies for downloading

• Dataset Details

  Details about tracks loaded onto GBROWSE and databases for BLAST.

• Consortium

  The people (past and present) in the Consortium

• Publications

  Our publications about the Benth Genome and Transcriptome

• Leave a Message

  Type your question or message into query box

The CTCB

We are at the
Gardens Point Campus
in Brisbane, Australia.

Email: ctcbenquiries@qut.edu.au
Phone: 07 3138 2000
Mon - Fri, 8.30am - 5pm

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